Stem-loop ola-mir-210

Accession

MI0019554

Description

Oryzias latipes ola-mir-210 precursor miRNA

Sequence

166147 reads, 2233.0 reads per million, 47 experiments

uccgaguucuaaaagcagguAAGCCACUGACUAACGCACAUUGugcgugugacagauccaCUGUGCGUGUGACAGCGGCUAAccugguuuugggaaaaccucuga
...(((((((((((.(((((.((((.(((.(..(((((((..(((.((.......)).))))))))))..).))).)))).))))).))))))))....)))...

Structure

ucc   ----        g     A    A   A UA       UU   c  gu 
   gag    uucuaaaa caggu AGCC CUG C  ACGCACA  Gug gu  g
   |||    |||||||| ||||| |||| ||| |  |||||||  ||| ||  a
   cuc    aggguuuu guccA UCGG GAC G  UGCGUGU  Cac ua  c
agu   caaa        g     A    C   A UG       --   c  ga 

Annotation confidence Medium

Genome context

scaffold676: 57142-57246 [+]

Mature ola-miR-210-5p

• Accession: MIMAT0022660
• Description: Oryzias latipes ola-miR-210-5p mature miRNA
• Sequence: 21 - AAGCCACUGACUAACGCACAUUG - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-210-3p

• Accession: MIMAT0022661
• Description: Oryzias latipes ola-miR-210-3p mature miRNA
• Sequence: 61 - CUGUGCGUGUGACAGCGGCUAA - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8