Stem-loop ola-mir-459

Accession

MI0019558

Description

Oryzias latipes ola-mir-459 precursor miRNA

Sequence

caccugcccguggcgugcugcugUCAGUAACAAGGAUUCAUCCUGuugugacgcugcagacggaCAGGAAGUCAUUGUUACUgggagugucugucacaugaugug
.........((((((.((.(((.((((((((((.((((..(((((((((..........)).))))))))))).)))))))))).))))).))))))........

Structure

caccugccc      u  u   g          G    CA       -  gacg 
         guggcg gc gcu UCAGUAACAA GAUU  UCCUGuu gu    c
         |||||| || ||| |||||||||| ||||  ||||||| ||     
         cacugu ug uga ggUCAUUGUU CUGA  AGGACag ca    u
-guguagua      c  -   g          A    --       g  gacg 

Annotation confidence Not enough data

Genome context

ultracontig26: 364478-364582 [+]

Mature ola-miR-459-5p

• Accession: MIMAT0022664
• Description: Oryzias latipes ola-miR-459-5p mature miRNA
• Sequence: 24 - UCAGUAACAAGGAUUCAUCCUG - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-459-3p

• Accession: MIMAT0022665
• Description: Oryzias latipes ola-miR-459-3p mature miRNA
• Sequence: 65 - CAGGAAGUCAUUGUUACU - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8