Stem-loop ola-mir-30a

Accession

MI0019559

Description

Oryzias latipes ola-mir-30a precursor miRNA

Literature search

1 open access papers mention ola-mir-30a
(3 sentences)

Sequence

103506 reads, 3533.0 reads per million, 49 experiments

gguccaguuggcagucggggcuacUGUAAACAUCCUUGACUGGAAGCUgguguugauuucuggggCUUUCAGUCGGAUGUUUGCAGGagccaacugcuaguucc
.......((((((((...((((.((((((((((((..(((((((((((...(.......)...))))))))))))))))))))))).)))).))))))))....

Structure

gguccag        cgg    a            UU           ggu uu 
       uuggcagu   ggcu cUGUAAACAUCC  GACUGGAAGCU   g  g
       ||||||||   |||| ||||||||||||  |||||||||||   |  a
       gaucguca   ccga GACGUUUGUAGG  CUGACUUUCgg   c  u
---ccuu        --a    G            --           ggu uu 

Annotation confidence High

Genome context

ultracontig66: 99987-100090 [+]

Mature ola-miR-30a-5p

• Accession: MIMAT0022666
• Description: Oryzias latipes ola-miR-30a-5p mature miRNA
• Sequence: 25 - UGUAAACAUCCUUGACUGGAAGCU - 48
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-30a-3p

• Accession: MIMAT0022667
• Description: Oryzias latipes ola-miR-30a-3p mature miRNA
• Sequence: 66 - CUUUCAGUCGGAUGUUUGCAGG - 87
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8