Stem-loop ola-mir-181a-2

Accession

MI0019560

Description

Oryzias latipes ola-mir-181a-2 precursor miRNA

Literature search

2 open access papers mention ola-mir-181a-2
(109 sentences)

Sequence

3701879 reads, 28541.0 reads per million, 49 experiments

ucaaggAACAUUCAACGCUGUCGGUGAGUuugugacaaaggagaaACCAUCGAGCGUUGAGUGUACccga
....((.(((((((((((..((((((.((((.(........).))))))))))))))))))))).))...

Structure

ucaa  A           UG      A    g gac 
    gg ACAUUCAACGC  UCGGUG GUuu u   a
    || |||||||||||  |||||| |||| |    
    cC UGUGAGUUGCG  AGCUAC CAaa a   a
-agc  A           --      -    g gga 

Annotation confidence High

Genome context

ultracontig105: 3834-3903 [+]

Mature ola-miR-181a-5p

• Accession: MIMAT0022586
• Description: Oryzias latipes ola-miR-181a-5p mature miRNA
• Sequence: 7 - AACAUUCAACGCUGUCGGUGAGU - 29
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-181a-2-3p

• Accession: MIMAT0057109
• Description: Oryzias latipes ola-miR-181a-2-3p mature miRNA
• Sequence: 46 - ACCAUCGAGCGUUGAGUGUAC - 66
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8