Stem-loop ola-mir-143

Accession

MI0019561

Description

Oryzias latipes ola-mir-143 precursor miRNA

Literature search

3 open access papers mention ola-mir-143
(5 sentences)

Sequence

1807621 reads, 28427.0 reads per million, 49 experiments

ugguucugguccaucucugcugcccauGGUGCAGUGCUGCAUCUCUGGUCaguugauagucUGAGAUGAAGCACUGUAGCUcgggacggagggcaggagucucagucug
.((..(((((((..((((.((((((..(.(((((((((.((((((..(((....))).....)))))).))))))))).)..))).)))))))..)))...)))).)).

Structure

u  uu    ---   au    g   -   au G         G      ---UG   a 
 gg  cugg   ucc  cucu cug ccc  G UGCAGUGCU CAUCUC     GUC g
 ||  ||||   |||  |||| ||| |||  | ||||||||| ||||||     |||  
 uc  gacu   agg  ggga ggc ggg  C AUGUCACGA GUAGAG     uag u
g  -u    cug   ac    -   a   cU G         A      Ucuga   u 

Annotation confidence High

Genome context

ultracontig115: 5319909-5320017 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-143

Mature ola-miR-143-5p

• Accession: MIMAT0057165
• Description: Oryzias latipes ola-miR-143-5p mature miRNA
• Sequence: 28 - GGUGCAGUGCUGCAUCUCUGGUC - 50
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-143-3p

• Accession: MIMAT0022668
• Description: Oryzias latipes ola-miR-143-3p mature miRNA
• Sequence: 62 - UGAGAUGAAGCACUGUAGCU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8