Stem-loop ola-mir-145

Accession

MI0019562

Description

Oryzias latipes ola-mir-145 precursor miRNA

Literature search

3 open access papers mention ola-mir-145
(4 sentences)

Sequence

144582 reads, 2185.0 reads per million, 48 experiments

GUCCAGUUUUCCCAGGAAUCCCUugggcugucaaaaaaggGGAUUCCUGGAAAUACUGAU
...((((.((.(((((((((((((.............))))))))))))).)).))))..

Structure

GUC    U  C             gggcu 
   CAGU UU CCAGGAAUCCCUu     g
   |||| || |||||||||||||     u
   GUCA AA GGUCCUUAGGgga     c
-UA    U  A             aaaaa 

Annotation confidence Medium

Genome context

ultracontig115: 5320131-5320190 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-145

Mature ola-miR-145-5p

• Accession: MIMAT0022669
• Description: Oryzias latipes ola-miR-145-5p mature miRNA
• Sequence: 1 - GUCCAGUUUUCCCAGGAAUCCCU - 23
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-145-3p

• Accession: MIMAT0057166
• Description: Oryzias latipes ola-miR-145-3p mature miRNA
• Sequence: 41 - GGAUUCCUGGAAAUACUGAU - 60
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8