Stem-loop ola-mir-338-3

Accession

MI0019563

Description

Oryzias latipes ola-mir-338-3 precursor miRNA

Literature search

2 open access papers mention ola-mir-338-3
(2 sentences)

Sequence

49456 reads, 405.0 reads per million, 47 experiments

gaacuucacggccacuuccugaAACAAUAUCCUGGUGCUGCCCGAGUgcggcucacagacUCCAGCAUCAGUGAUUUUGUUgcaggcgguggccacgccuc
.........(((((((.((((.(((((.((((((((((((...((((..(.....)..))))))))))))).))).))))).)))).))))))).......

Structure

gaacuucac       u    a     U   -         CCC    gc g 
         ggccacu ccug AACAA AUC CUGGUGCUG   GAGU  g c
         ||||||| |||| ||||| ||| |||||||||   ||||  | u
         ccggugg ggac UUGUU UAG GACUACGAC   CUca  c c
--cuccgca       c    g     U   U         ---    ga a 

Annotation confidence High

Genome context

ultracontig221: 99754-99854 [-]

Mature ola-miR-338-3-5p

• Accession: MIMAT0057153
• Description: Oryzias latipes ola-miR-338-3-5p mature miRNA
• Sequence: 23 - AACAAUAUCCUGGUGCUGCCCGAGU - 47
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-338-3p

• Accession: MIMAT0022580
• Description: Oryzias latipes ola-miR-338-3p mature miRNA
• Sequence: 61 - UCCAGCAUCAGUGAUUUUGUU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8