Stem-loop ola-mir-1788

Accession

MI0019564

Description

Oryzias latipes ola-mir-1788 precursor miRNA

Sequence

12471 reads, 98.0 reads per million, 26 experiments

gagcuucaguccaguuuucgaGGCUUGUUUUAAGUUGCCUGCGgcucguacauggacaCAGGCAGCUAAAGCAAGUCUGgaacgcuggaaacgcac
..((.....((((((.(((.((((((((((((.((((((((.(.............).)))))))))))))))))))).))).))))))...))..

Structure

ga  uucag      u   g            A        C gcucg 
  gc     uccagu uuc aGGCUUGUUUUA GUUGCCUG G     u
  ||     |||||| ||| |||||||||||| |||||||| |     a
  cg     aggucg aag UCUGAACGAAAU CGACGGAC c     c
ca  --caa      c   G            -        a aggua 

Annotation confidence High

Genome context

ultracontig257: 1240225-1240320 [-]

Mature ola-miR-1788-5p

• Accession: MIMAT0057167
• Description: Oryzias latipes ola-miR-1788-5p mature miRNA
• Sequence: 22 - GGCUUGUUUUAAGUUGCCUGCG - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-1788-3p

• Accession: MIMAT0022670
• Description: Oryzias latipes ola-miR-1788-3p mature miRNA
• Sequence: 59 - CAGGCAGCUAAAGCAAGUCUG - 79
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8