Stem-loop spu-mir-5994

Accession

MI0020187

Description

Strongylocentrotus purpuratus spu-mir-5994 precursor miRNA

Sequence

UGGAACCGAUAAUGGAUCAGGccucgaucaguccuguugucuaugcgaugaugaagcguuggaucggugaucugguccaaaauauagauagguccagg
((((.((.....((((((((((.((((((...(((.(((((........))))))).)...)))))).).)))))))))...........))))))..

Structure

--    A  ------GAUAA         - c      agu -  g     uau 
  UGGA CC           UGGAUCAGG c ucgauc   c cu uuguc   g
  |||| ||           ||||||||| | ||||||   | || |||||    
  accu gg           accuggucu g ggcuag   g ga aguag   c
gg    -  auagauauaaa         a u      guu c  -     uag 

Annotation confidence Not enough data

Genome context

KN913685.1: 85863-85960 [+]

Mature spu-miR-5994

• Accession: MIMAT0023516
• Description: Strongylocentrotus purpuratus spu-miR-5994 mature miRNA
• Sequence: 1 - UGGAACCGAUAAUGGAUCAGG - 21
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22216218
   RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star
   Kadri S, Hinman VF, Benos PV
   PLoS One (2011) 6:e29217