Stem-loop rno-mir-3068

Accession

MI0021534

Description

Rattus norvegicus rno-mir-3068 precursor miRNA

Literature search

2 open access papers mention rno-mir-3068
(8 sentences)

Sequence

116191 reads, 87 reads per million, 493 experiments

aagaguaaUUGGAGUUCAUGCAAGUUCUAACCAguuuaaccaguagcugGGUGAAUUGCAGUACUCCAACAuucug
.(((((..(((((((...(((((.(((...((((((........))))))..))))))))..))))))).))))).

Structure

a     aa       UCA     G   UAA      uaa 
 agagu  UUGGAGU   UGCAA UUC   CCAguu   c
 |||||  |||||||   ||||| |||   ||||||    
 ucuuA  AACCUCA   ACGUU AAG   Ggucga   c
g     -C       -UG     -   -UG      uga 

Annotation confidence Medium

Genome context

chr6: 111468732-111468807 [-]

Mature rno-miR-3068-5p

• Accession: MIMAT0024845
• Description: Rattus norvegicus rno-miR-3068-5p mature miRNA
• Sequence: 9 - UUGGAGUUCAUGCAAGUUCUAACCA - 33
• Evidence: experimental ; Illumina [1-2]

Mature rno-miR-3068-3p

• Accession: MIMAT0024846
• Description: Rattus norvegicus rno-miR-3068-3p mature miRNA
• Sequence: 50 - GGUGAAUUGCAGUACUCCAACA - 71
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 22470567
   Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation
   Meng F, Hackenberg M, Li Z, Yan J, Chen T
   PLoS One (2012) 7:e34394


2. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


3. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324