Stem-loop rno-mir-509

Accession

MI0021536

Description

Rattus norvegicus rno-mir-509 precursor miRNA

Gene family

MIPF0000130; mir-506

Literature search

1 open access papers mention rno-mir-509
(5 sentences)

Sequence

794 reads, 73 reads per million, 99 experiments

cugugugugguucuuUACUCCAGAAUAUGGCAAUCAUGcauaauuaaaugUGAUUGACAUGUCUGCAGUGGAguaacacaugcaa
.((((((((...(((((((.((((.((((.(((((..((((......))))))))).)))))))).)))))))...)))))))).

Structure

c        guu       C    A    G     AU    aa 
 ugugugug   cuuUACU CAGA UAUG CAAUC  Gcau  u
 ||||||||   ||||||| |||| |||| |||||  ||||   
 acguacac   gAGGUGA GUCU GUAC GUUAG  Ugua  u
a        aau       C    -    A     --    aa 

Annotation confidence High

Genome context

chrX: 155317206-155317290 [+]

Mature rno-miR-509-5p

• Accession: MIMAT0024849
• Description: Rattus norvegicus rno-miR-509-5p mature miRNA
• Sequence: 16 - UACUCCAGAAUAUGGCAAUCAUG - 38
• Evidence: experimental ; Illumina [1]

Mature rno-miR-509-3p

• Accession: MIMAT0024850
• Description: Rattus norvegicus rno-miR-509-3p mature miRNA
• Sequence: 51 - UGAUUGACAUGUCUGCAGUGGA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22470567
   Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation
   Meng F, Hackenberg M, Li Z, Yan J, Chen T
   PLoS One (2012) 7:e34394