Stem-loop ppe-MIR6257

Accession

MI0021607

Description

Prunus persica ppe-MIR6257 precursor miRNA

Sequence

augucuuauaUCUUAACUGUUGGAUUAGGCUaacuaauuugauucaacgacugacuaauuugauccaacgauuaagagauaaaaccuuauauaagggccauauauaaggcca
..((.((((.((((((.((((((((((((.........(((......)))........)))))))))))).)))))).)))).))..........((((........)))).

Structure

-------------------------au  c    a      C            CUaacuaau   au 
                           gu uuau UCUUAA UGUUGGAUUAGG         uug  u
                           || |||| |||||| ||||||||||||         |||   
                           ca aaua agaauu gcaaccuaguuu         agc  c
accggaauauauaccgggaauauauuc  a    g      a            -aaucaguc   aa 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG3: 708414-708525 [-]

Mature ppe-miR6257

• Accession: MIMAT0027270
• Description: Prunus persica ppe-miR6257 mature miRNA
• Sequence: 11 - UCUUAACUGUUGGAUUAGGCU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371