Stem-loop ppe-MIR171f

Accession

MI0021611

Description

Prunus persica ppe-MIR171f precursor miRNA

Literature search

6 open access papers mention ppe-MIR171f
(17 sentences)

Sequence

1277 reads, 134.0 reads per million, 19 experiments

auaguuacugcgaUGUUGGCCCGGUUCACUCAGAgaagaugaauucccuucugaauuUGAUUGAGCCGUGCCAAUAUCUcagugcucu
..(((.((((.(((((((((.(((((((.(((((..(((.(......).)))...))))).))))))).))))))))).)))))))..

Structure

au   u    c         C       C     -ga   u aa 
  agu acug gaUGUUGGC CGGUUCA UCAGA   aga g  u
  ||| |||| ||||||||| ||||||| |||||   ||| |   
  ucg ugac CUAUAACCG GCCGAGU AGUuu   ucu c  u
uc   -    U         U       U     aag   u cc 

Annotation confidence High

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG1: 33174516-33174603 [+]

Mature ppe-miR171f-5p

• Accession: MIMAT0058462
• Description: Prunus persica ppe-miR171f-5p mature miRNA
• Sequence: 14 - UGUUGGCCCGGUUCACUCAGA - 34
• Evidence: experimental ; unknown

Mature ppe-miR171f-3p

• Accession: MIMAT0027274
• Description: Prunus persica ppe-miR171f-3p mature miRNA
• Sequence: 58 - UGAUUGAGCCGUGCCAAUAUCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371