Stem-loop ppe-MIR6260

Accession

MI0021613

Description

Prunus persica ppe-MIR6260 precursor miRNA

Literature search

1 open access papers mention ppe-MIR6260
(1 sentences)

Sequence

uucucacuuaaacucccauucuccucacucugucugaaaaguuaauucagagcaugggguaacuuuuccgaUGGAGUGAGAGAAUGGGAGGUcaaguauuuu
.....((((...(((((((((((.((((((((((.(((((((((.((((.....)))).))))))))).)))))))))))))))))))))...)))).....

Structure

uucuc    aaa           c          u         a    g 
     acuu   cucccauucuc ucacucuguc gaaaaguua uuca a
     ||||   ||||||||||| |||||||||| ||||||||| |||| g
     ugaa   GAGGGUAAGAG AGUGAGGUag cuuuucaau gggu c
uuuua    cUG           -          c         g    a 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG1: 41542961-41543062 [+]

Mature ppe-miR6260

• Accession: MIMAT0027276
• Description: Prunus persica ppe-miR6260 mature miRNA
• Sequence: 72 - UGGAGUGAGAGAAUGGGAGGU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371