Stem-loop ppe-MIR6261

Accession

MI0021614

Description

Prunus persica ppe-MIR6261 precursor miRNA

Sequence

346 reads, 54.0 reads per million, 19 experiments

acauaAGAGGUGCUUCUCCCCAGAAUcacuuaaaaucacuaaaAGUGAUUAUAUGGAGAAGcacauggaauaug
.........((((((((((....((((((((...........))))))))....))))))))))..........

Structure

-acauaAGAG          CCAG        aaaa 
          GUGCUUCUCC    AAUcacuu    u
          ||||||||||    ||||||||    c
          cacGAAGAGG    UUAGUGAa    a
guauaaggua          UAUA        aauc 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG1: 43423620-43423693 [-]

Mature ppe-miR6261-5p

• Accession: MIMAT0058464
• Description: Prunus persica ppe-miR6261-5p mature miRNA
• Sequence: 6 - AGAGGUGCUUCUCCCCAGAAU - 26
• Evidence: experimental ; unknown

Mature ppe-miR6261-3p

• Accession: MIMAT0027277
• Description: Prunus persica ppe-miR6261-3p mature miRNA
• Sequence: 44 - AGUGAUUAUAUGGAGAAG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371