Stem-loop ppe-MIR6264

Accession

MI0021618

Description

Prunus persica ppe-MIR6264 precursor miRNA

Sequence

1019 reads, 414.0 reads per million, 20 experiments

uucucaACACUUGACAUGUGUCCAUaugcauaaccauaguuaacuucuacuuuguauuuauggaaccaugguuAUGCCUAUGGACACGUGUCAAguguugauaa
...(((((((((((((((((((((((.((((((((((.(((......(((...))).......))).)))))))))).)))))))))))))))))))))))...

Structure

uuc                       u          a   -aacuuc   u 
   ucaACACUUGACAUGUGUCCAUa gcauaaccau guu       uac  
   ||||||||||||||||||||||| |||||||||| |||       ||| u
   aguugugAACUGUGCACAGGUAU CGUAuuggua caa       aug  
aau                       C          c   gguauuu   u 

Annotation confidence Low

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG2: 146951-147054 [+]

Mature ppe-miR6264-5p

• Accession: MIMAT0058466
• Description: Prunus persica ppe-miR6264-5p mature miRNA
• Sequence: 7 - ACACUUGACAUGUGUCCAU - 25
• Evidence: experimental ; unknown

Mature ppe-miR6264-3p

• Accession: MIMAT0027281
• Description: Prunus persica ppe-miR6264-3p mature miRNA
• Sequence: 74 - AUGCCUAUGGACACGUGUCAA - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371