Stem-loop ppe-MIR482c

Accession

MI0021620

Description

Prunus persica ppe-MIR482c precursor miRNA

Literature search

2 open access papers mention ppe-MIR482c
(6 sentences)

Sequence

124030 reads, 6068.0 reads per million, 20 experiments

uggagcuacugggaauuguaGGAAUGGGCUGUUUGGGAUGAAagaaaaucacuaagaaaauuuucuuguugauauuuucUUCCCAAGCCCGCCCAUUCCAAUGauuucuagcggcuccucc
.((((((.(((((((((((.(((((((((.((((((((.(((((...((((.((((((....)))))).)))).))))).))))))))..))))))))).))))))))))).))))))...

Structure

--u      a           a         -U        U     aaa    c      a 
   ggagcu cugggaauugu GGAAUGGGC  GUUUGGGA GAAag   auca uaagaa a
   |||||| ||||||||||| |||||||||  |||||||| |||||   |||| ||||||  
   ccucgg gaucuuuaGUA CCUUACCCG  CGAACCCU cuuuu   uagu guucuu u
ccu      c           A         CC        U     --a    u      u 

Annotation confidence High

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG3: 16316472-16316592 [+]

Mature ppe-miR482c-5p

• Accession: MIMAT0027283
• Description: Prunus persica ppe-miR482c-5p mature miRNA
• Sequence: 21 - GGAAUGGGCUGUUUGGGAUGAA - 42
• Evidence: experimental ; Illumina [1-2]

Mature ppe-miR482c-3p

• Accession: MIMAT0031169
• Description: Prunus persica ppe-miR482c-3p mature miRNA
• Sequence: 80 - UUCCCAAGCCCGCCCAUUCCAAUG - 103
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371


2. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149