Stem-loop ppe-MIR6265

Accession

MI0021621

Description

Prunus persica ppe-MIR6265 precursor miRNA

Sequence

2040 reads, 90.0 reads per million, 19 experiments

caauugguccUUGAACUUUGACCCGAUUCGCAUuuuggucucucaauuuucaaaaucguucacgucaaaaugcAAAUCGGGUCAAAAUUCAAauaccauuaa
....((((..(((((.((((((((((((.(((((((((.(.......................)))))))))).)))))))))))).)))))..))))....

Structure

caau    cc     C            C         u ucucaauuuu 
    uggu  UUGAA UUUGACCCGAUU GCAUuuugg c          c
    ||||  ||||| |||||||||||| ||||||||| |          a
    acca  AACUU AAACUGGGCUAA cguaaaacu g          a
aauu    ua     A            A         - cacuugcuaa 

Annotation confidence Medium

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG3: 19142223-19142324 [+]

Mature ppe-miR6265-5p

• Accession: MIMAT0027284
• Description: Prunus persica ppe-miR6265-5p mature miRNA
• Sequence: 11 - UUGAACUUUGACCCGAUUCGCAU - 33
• Evidence: experimental ; Illumina [1]

Mature ppe-miR6265-3p

• Accession: MIMAT0058467
• Description: Prunus persica ppe-miR6265-3p mature miRNA
• Sequence: 74 - AAAUCGGGUCAAAAUUCAA - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371