Stem-loop ppe-MIR171h

Accession

MI0021622

Description

Prunus persica ppe-MIR171h precursor miRNA

Literature search

6 open access papers mention ppe-MIR171h
(17 sentences)

Sequence

7068 reads, 263.0 reads per million, 20 experiments

ugugaauauauacauaaugaAGGUAUUGGCGCGCCUCAAUUUGaaggcaugguuaauauauggagaccuuagccaugugauucugaUUGAGCCGCGUCAAUAUCUCCUuuugcaucucucuccaugu
((((........))))....(((((((((((((.(((((((.(((.((((((((((............))))))))))..))).))))))).)))))))))))))......................

Structure

--ugugaauauauacauaauga             C       U   -g          uauau 
                      AGGUAUUGGCGCG CUCAAUU Gaa  gcaugguuaa     g
                      ||||||||||||| ||||||| |||  ||||||||||      
                      UCUAUAACUGCGC GAGUUag cuu  uguaccgauu     g
uguaccucucucuacguuuUCC             C       u   ag          ccaga 

Annotation confidence High

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG3: 21868080-21868206 [+]

Mature ppe-miR171h-5p

• Accession: MIMAT0058468
• Description: Prunus persica ppe-miR171h-5p mature miRNA
• Sequence: 21 - AGGUAUUGGCGCGCCUCAAUUUG - 43
• Evidence: experimental ; unknown

Mature ppe-miR171h-3p

• Accession: MIMAT0027285
• Description: Prunus persica ppe-miR171h-3p mature miRNA
• Sequence: 87 - UUGAGCCGCGUCAAUAUCUCCU - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371