Stem-loop ppe-MIR171a

Accession

MI0021623

Description

Prunus persica ppe-MIR171a precursor miRNA

Literature search

6 open access papers mention ppe-MIR171a
(17 sentences)

Sequence

1506 reads, 253.0 reads per million, 19 experiments

aauggaucgguuuaacgggaUAUUGGUCCGGUUCAAUAAGAaagcagugcucuaagugcuugagcucugcuuuuUGAUUGAGCCGUGCCAAUAUCacgugccacuguuccuuuau
...(((.((((...(((.(((((((((.(((((((((.(((((((((.((((.........)))).))))))))).))))))))).))))))))).)))...)))).))).....

Structure

--aau   u    uua   g         C         A         u    uaa 
     gga cggu   acg gaUAUUGGU CGGUUCAAU AGAaagcag gcuc   g
     ||| ||||   ||| ||||||||| ||||||||| ||||||||| ||||   u
     ccu guca   ugc CUAUAACCG GCCGAGUUA Uuuuucguc cgag   g
uauuu   u    ccg   a         U         G         u    uuc 

Annotation confidence High

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG3: 21899734-21899848 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR171a

Mature ppe-miR171a-5p

• Accession: MIMAT0058469
• Description: Prunus persica ppe-miR171a-5p mature miRNA
• Sequence: 21 - UAUUGGUCCGGUUCAAUAAGA - 41
• Evidence: experimental ; unknown

Mature ppe-miR171a-3p

• Accession: MIMAT0027286
• Description: Prunus persica ppe-miR171a-3p mature miRNA
• Sequence: 75 - UGAUUGAGCCGUGCCAAUAUC - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371