Stem-loop ppe-MIR171e

Accession

MI0021626

Description

Prunus persica ppe-MIR171e precursor miRNA

Literature search

6 open access papers mention ppe-MIR171e
(17 sentences)

Sequence

393 reads, 26.0 reads per million, 14 experiments

aguggcacgugauaUUGGCACGGCUCAAUCAAAaagcagagcucaagcacuuagagcacugcuuucUUAUUGAACCGGACCAAUAUCccguuaaacc
.((...(((.((((((((..(((.(((((...(((((((.((((.........)))).)))))))...))))).)))..)))))))).)))...)).

Structure

a  ggc   u        CA   C     CAA       a    aag 
 gu   acg gauaUUGG  CGG UCAAU   Aaagcag gcuc   c
 ||   ||| ||||||||  ||| |||||   ||||||| ||||   a
 ca   ugc CUAUAACC  GCC AGUUA   uuucguc cgag   c
c  aau   c        AG   A     UUc       a    auu 

Annotation confidence High

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG3: 21899742-21899838 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR171e

Mature ppe-miR171e-5p

• Accession: MIMAT0058470
• Description: Prunus persica ppe-miR171e-5p mature miRNA
• Sequence: 15 - UUGGCACGGCUCAAUCAAA - 33
• Evidence: experimental ; unknown

Mature ppe-miR171e-3p

• Accession: MIMAT0027289
• Description: Prunus persica ppe-miR171e-3p mature miRNA
• Sequence: 67 - UUAUUGAACCGGACCAAUAUC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371