Stem-loop ppe-MIR6266a

Accession

MI0021627

Description

Prunus persica ppe-MIR6266a precursor miRNA

Sequence

89 reads, 19.0 reads per million, 17 experiments

uuuuuuuuguUAAAUGCAGGGGCAAAAUGAUauuuuuauguuaaaaacaaaaaaaaaaugaauaaaaaaucauaucuuuaaaauaacaaugaaagaaaaucaaauaaaaaaccaacccaaaaaaaaaaagauaaauuaaguuugggggaguAGAAAUCGGGAUAGAAGGggagagugagaguuuaauuuuaauuuuuuaauuuuuuaauuuuuuaugcauauuuuaaucuauuuugauacaaaaauacaauuuugccccugcauuuaacagaaaagu
.(((((((((((((((((((((((((((..(((((((.((((((((...........((((........)))).(((((............)))))...................((((((...................))))))(((...(((((..(.((((((((((((((((((((((.......)))))))..)))))))..)))))))).)..)))))..))).)))))))).)))))))..))))))))))))))))))))))))))).

Structure

u                           GA       a        acaaaaaaaaaaugaauaaaaaaucauaucuuuaaaauaacaaugaaagaaaaucaaauaaaaaaccaacccaaaaaaaaaaagauaaauuaaguuuggg   guA     CG G        --       --       ua 
 uuuuuuuguUAAAUGCAGGGGCAAAAU  Uauuuuu uguuaaaa                                                                                                    gga   GAAAU  G AUAGAAGG  ggagagu  gagaguu  a
 |||||||||||||||||||||||||||  ||||||| ||||||||                                                                                                    |||   |||||  | ||||||||  |||||||  |||||||  u
 gaaaagacaauuuacguccccguuuua  auaaaaa auaguuuu                                                                                                    ucu   uuuua  c uauuuuuu  uuuuuua  uuuuuaa  u
u                           ac       c        ---------------------------------------------------------------------------------------------------a   -aa     ua g        aa       au       uu 

Annotation confidence Medium

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 6953575-6953851 [+]

Mature ppe-miR6266a-5p

• Accession: MIMAT0027290
• Description: Prunus persica ppe-miR6266a-5p mature miRNA
• Sequence: 11 - UAAAUGCAGGGGCAAAAUGAU - 31
• Evidence: experimental ; Illumina [1]

Mature ppe-miR6266a-3p

• Accession: MIMAT0058471
• Description: Prunus persica ppe-miR6266a-3p mature miRNA
• Sequence: 152 - AGAAAUCGGGAUAGAAGG - 169
• Evidence: experimental ; unknown

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371