Stem-loop ppe-MIR6267a

Accession

MI0021628

Description

Prunus persica ppe-MIR6267a precursor miRNA

Sequence

211 reads, 34.0 reads per million, 18 experiments

auuuuucauaccaUAAUUGUACCAUCUCUCUAAUAGAggugggccccguuguauugaugggcuccaccuuuauUAGAGAGGUGGUACAAUUGUGAUAugaaaaa
.(((((((((.((((((((((((((((((((((((((((((((.((((((.....)))))).)))))))))))))))))))))))))))))))).)))))))))

Structure

a         c                                c      g 
 uuuuucaua caUAAUUGUACCAUCUCUCUAAUAGAgguggg cccguu u
 ||||||||| |||||||||||||||||||||||||||||||| |||||| a
 aaaaaguAU GUGUUAACAUGGUGGAGAGAUuauuuccaccu ggguag u
-         A                                c      u 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 9731649-9731752 [+]

Mature ppe-miR6267a-5p

• Accession: MIMAT0058472
• Description: Prunus persica ppe-miR6267a-5p mature miRNA
• Sequence: 14 - UAAUUGUACCAUCUCUCUAAUAGA - 37
• Evidence: experimental ; unknown

Mature ppe-miR6267a-3p

• Accession: MIMAT0027291
• Description: Prunus persica ppe-miR6267a-3p mature miRNA
• Sequence: 74 - UAGAGAGGUGGUACAAUUGUGAUA - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371