Stem-loop ppe-MIR6269

Accession

MI0021630

Description

Prunus persica ppe-MIR6269 precursor miRNA

Sequence

199 reads, 78.0 reads per million, 20 experiments

cuucauaucuuAUGUGAAUAGUGAUUGCCauggcaacgggugaaaacacgcauuacuuuuugcgAGGGCAGCCACUAUUCACauaaaaguagcug
.........((((((((((((((.(((((.(.((((.((((((.........)))))).)))).).))))).)))))))))))))).........

Structure

cuucauauc              A     a g    c      aaa 
         uuAUGUGAAUAGUG UUGCC u gcaa ggguga   c
         |||||||||||||| ||||| | |||| ||||||   a
         aauaCACUUAUCAC GACGG A cguu uucauu   c
gucgaugaa              C     G g    u      acg 

Annotation confidence Medium

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 18225135-18225229 [+]

Mature ppe-miR6269-5p

• Accession: MIMAT0027293
• Description: Prunus persica ppe-miR6269-5p mature miRNA
• Sequence: 12 - AUGUGAAUAGUGAUUGCC - 29
• Evidence: experimental ; Illumina [1]

Mature ppe-miR6269-3p

• Accession: MIMAT0058474
• Description: Prunus persica ppe-miR6269-3p mature miRNA
• Sequence: 65 - AGGGCAGCCACUAUUCAC - 82
• Evidence: experimental ; unknown

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371