Stem-loop ppe-MIR398a

Accession

MI0021631

Description

Prunus persica ppe-MIR398a precursor miRNA

Literature search

5 open access papers mention ppe-MIR398a
(13 sentences)

Sequence

agagggguuccacaGGAGCGACCUGGGAUCACAUGcguccacccucacauuaacacaaugugcugcauugcuaguguauugugcucgaUGUGUUCUCAGGUCGCCCCUGcaguaccuuc
.(((((...(..((((.(((((((((((.(((((.((..(((....((((((...((((((...)))))).))))))...)))..))))))).))))))))))).))))..)..)))))

Structure

a     guu ca    A           U     G  uc   ccuc      aca      g 
 gaggg   c  caGG GCGACCUGGGA CACAU cg  cac    acauua   caaugu  
 |||||   |  |||| ||||||||||| ||||| ||  |||    ||||||   |||||| c
 cuucc   g  GUCC CGCUGGACUCU GUGUa gc  gug    ugugau   guuacg  
-     -au ac    C           U     -  uc   -uua      --c      u 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 20111541-20111659 [+]

Mature ppe-miR398a-5p

• Accession: MIMAT0031173
• Description: Prunus persica ppe-miR398a-5p mature miRNA
• Sequence: 15 - GGAGCGACCUGGGAUCACAUG - 35
• Evidence: experimental ; Illumina [2]

Mature ppe-miR398a-3p

• Accession: MIMAT0027294
• Description: Prunus persica ppe-miR398a-3p mature miRNA
• Sequence: 89 - UGUGUUCUCAGGUCGCCCCUG - 109
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371


2. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149