Stem-loop ppe-MIR6270

Accession

MI0021632

Description

Prunus persica ppe-MIR6270 precursor miRNA

Sequence

863 reads, 219.0 reads per million, 20 experiments

ucugaggucaaauuggaaaaAGAAAUUCCAAUACCUGAAUCAaugaacaucuagaaaaccccaacuaucccugcuacaaaauuccuagcugugagguugguaccacuggauuuucaaguacaugucuucagugaauuggguuucugcaagaacaagaaaauccauuuaugggucacaaccauugaguagcuagaggccuauaaaaucaacaucugauauugguacgaauaagcuacgucggugcgugcauuuaauaucuagugggucaaggucauacaugauuuagagaaaacaucauuagagaauacauauuuggaaacucuggaugcucaccgaUUCUGGUAUUGGAAUUUCAUUuucugauuugaauccagaug
((((.(((((((((((((((.((((((((((((((.(((((..(((.((((((((...((((((((.((.(.((((.........)))).).))))))))..(((((((((.((.((((.(((((.....((((((.((((((((.........)).)))))))))))).(((....)))(((((((((((....(((.(((...(((.....)))))).))).......)))))).)))))))))).)))))).))))))))).((.((((((....)))))).))...........................))....)))))))).)))..))))).)))))))))))))).)))))))))))).)))))))..

Structure

--    a   -            A              U     Aa   a        -aaa  --------ccaacuaucccugcuacaaaauuccuagcugugagguuggua         u  c    a     cuucagugaauuggguuucugcaagaacaagaaaauccauuuaugggucacaacc     -      ---agag   u   aaa   a 
  ucug ggu caaauuggaaaa GAAAUUCCAAUACC GAAUC  uga caucuaga    cc                                                  ccacuggau uu aagu caugu                                                       auuga guagcu       gcc aua   uca c
  |||| ||| |||||||||||| |||||||||||||| |||||  ||| ||||||||    ||                                                  ||||||||| || |||| |||||                                                       ||||| ||||||       ||| |||   ||| a
  agac cua guuuagucuuUU CUUUAAGGUUAUGG CUUag  acu guaggucu    gg                                                  ggugaucua aa uuua gugcg                                                       uggcu caucga       ugg uau   agu u
gu    -   a            A              U     cc   c        caaa  uuuauacauaagagauuacuacaaaagagauuuaguacauacuggaacug         u  -    c     -------------------------------------------------------     g      auaagca   u   ---   c 

Annotation confidence High

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 25420161-25420537 [+]

Mature ppe-miR6270-5p

• Accession: MIMAT0058475
• Description: Prunus persica ppe-miR6270-5p mature miRNA
• Sequence: 21 - AGAAAUUCCAAUACCUGAAUCA - 42
• Evidence: experimental ; unknown

Mature ppe-miR6270-3p

• Accession: MIMAT0027295
• Description: Prunus persica ppe-miR6270-3p mature miRNA
• Sequence: 337 - UUCUGGUAUUGGAAUUUCAUU - 357
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371