Stem-loop ppe-MIR6271

Accession

MI0021633

Description

Prunus persica ppe-MIR6271 precursor miRNA

Sequence

2677 reads, 152.0 reads per million, 20 experiments

cguacaaaugcucgauaucugcuucagucuucggaugauguugucucauuUCUGACGGAGCUGGCUGGUGCcucuucggcaaguucuuaaucUCAAGAUUGAGAGAUAUAAUGcucucaaguu
.........((...((((((.((.(((((((.((((......(((........)))((((((.(((((.......))))).))))))..)))).)))))))))))))))...)).........

Structure

cguacaaau  ucg      g  u       c    gauguugucucauuUCUGAC      G     UG 
         gc   auaucu cu cagucuu ggau                    GGAGCU GCUGG  C
         ||   |||||| || ||||||| ||||                    |||||| |||||  c
         cG   UAUAGA GA GUUAGAA Ucua                    ucuuga cggcu  u
uugaacucu  UAA      -  -       C    ------------------au      a     uc 

Annotation confidence Low

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 8927455-8927577 [-]

Mature ppe-miR6271-5p

• Accession: MIMAT0058476
• Description: Prunus persica ppe-miR6271-5p mature miRNA
• Sequence: 51 - UCUGACGGAGCUGGCUGGUGC - 71
• Evidence: experimental ; unknown

Mature ppe-miR6271-3p

• Accession: MIMAT0027296
• Description: Prunus persica ppe-miR6271-3p mature miRNA
• Sequence: 93 - UCAAGAUUGAGAGAUAUAAUG - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371