Stem-loop ppe-MIR6275

Accession

MI0021639

Description

Prunus persica ppe-MIR6275 precursor miRNA

Sequence

uccaaugcuuuaugcuuccuuuugcuacuucuacuggaacuuguuugccuuuauuacaccaggcagaaaagcuccAGUGGAAGUAGCAAGGGGAAGCuggcauuggu
.((((((((....(((((((((((((((((((((((((.(((.(((((((..........))))))).))).))))))))))))))))))))))))).)))))))).

Structure

u        uuau                         a   g       uuau 
 ccaaugcu    gcuuccuuuugcuacuucuacugga cuu uuugccu    u
 ||||||||    ||||||||||||||||||||||||| ||| |||||||     
 gguuacgg    CGAAGGGGAACGAUGAAGGUGAccu gaa agacgga    a
u        ---u                         c   a       ccac 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG5: 10003687-10003793 [-]

Mature ppe-miR6275

• Accession: MIMAT0027302
• Description: Prunus persica ppe-miR6275 mature miRNA
• Sequence: 76 - AGUGGAAGUAGCAAGGGGAAGC - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371