Stem-loop ppe-MIR171g

Accession

MI0021641

Description

Prunus persica ppe-MIR171g precursor miRNA

Literature search

6 open access papers mention ppe-MIR171g
(16 sentences)

Sequence

aaaaaugugggauguuggaauggcucaaucaaaucaaaucucccaaguauuggguccuuugauuUGAUUGAGCCGUGCCAAUAUCacaguugccu
.......((.((((((((.(((((((((((((((((((...(((((...)))))...))))))))))))))))))).)))))))).)).......

Structure

aaaaaug  g        a                   ucu     g 
       ug gauguugg auggcucaaucaaaucaaa   cccaa  
       || |||||||| |||||||||||||||||||   ||||| u
       ac CUAUAACC UGCCGAGUUAGUuuaguuu   ggguu  
uccguug  a        G                   ccu     a 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG5: 13602614-13602708 [-]

Mature ppe-miR171g

• Accession: MIMAT0027304
• Description: Prunus persica ppe-miR171g mature miRNA
• Sequence: 65 - UGAUUGAGCCGUGCCAAUAUC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371