Stem-loop ppe-MIR6277

Accession

MI0021643

Description

Prunus persica ppe-MIR6277 precursor miRNA

Sequence

449 reads, 22.0 reads per million, 17 experiments

ugucuuucuaccucUCUCUUUCCACACAGAUUUGUCCUUugagaaucaaacaugugaaggacgaaUGUGUGUGGAAAGAGCGAGACguaaagggac
.((((((.((((((.(((((((((((((.(((((((((((...............))))))))))).))))))))))))).)))..))).))))))

Structure

u      c   --   U             G           gagaau 
 gucuuu uac  cuc CUCUUUCCACACA AUUUGUCCUUu      c
 |||||| |||  ||| ||||||||||||| |||||||||||      a
 caggga aug  GAG GAGAAAGGUGUGU Uaagcaggaag      a
-      a   CA   C             G           uguaca 

Annotation confidence Medium

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG6: 30077200-30077295 [-]

Mature ppe-miR6277-5p

• Accession: MIMAT0058478
• Description: Prunus persica ppe-miR6277-5p mature miRNA
• Sequence: 15 - UCUCUUUCCACACAGAUUUGUCCUU - 39
• Evidence: experimental ; unknown

Mature ppe-miR6277-3p

• Accession: MIMAT0027306
• Description: Prunus persica ppe-miR6277-3p mature miRNA
• Sequence: 66 - UGUGUGUGGAAAGAGCGAGAC - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371