Stem-loop ppe-MIR6278

Accession

MI0021644

Description

Prunus persica ppe-MIR6278 precursor miRNA

Sequence

accauuuccagcagccaccuuguagagaagguucauuaaauuuuuguacaauacuacauacaauaaUGAACCUUGUGUACAAAUUGGCugcaggaugg
.(((..(((.(((((((..(((((.(.(((((((((((......((((......)))).....))))))))))).).)))))..))))))).))))))

Structure

a   uu   a       cc     g g           aauuuu    ca 
 cca  ucc gcagcca  uugua a aagguucauua      ugua  a
 |||  ||| |||||||  ||||| | |||||||||||      ||||   
 ggu  agg cguCGGU  AACAU U UUCCAAGUaau      acau  u
-   --   a       UA     G G           -aacau    ca 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG7: 7788546-7788643 [+]

Mature ppe-miR6278

• Accession: MIMAT0027307
• Description: Prunus persica ppe-miR6278 mature miRNA
• Sequence: 67 - UGAACCUUGUGUACAAAUUGGC - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371