Stem-loop ppe-MIR6279

Accession

MI0021645

Description

Prunus persica ppe-MIR6279 precursor miRNA

Sequence

uuuauuuuuuaaucccuggaagucuugucugugaacauacaucucaucucaacucaacucaauggcuccuucucuucgcccaaacuuuucugcuacaacuccccauuuuuuaaacaugaucaUAGACAAGAAUUCCAGAGACCaaaaacuugu
.....(((((..((.((((((.((((((((((((.(((.........................(((...........)))....(......).......................))).)))))))))))).)))))).))..))))).....

Structure

uuuau     aa  c      g            a   ----------acaucucaucucaacucaacucaau   uccu 
     uuuuu  uc cuggaa ucuugucuguga cau                                   ggc    u
     |||||  || |||||| |||||||||||| |||                                   |||    c
     aaaaa  AG GACCUU AGAACAGAUacu gua                                   ccg    u
uguuc     CC  A      A            a   caaauuuuuuaccccucaacaucgucuuuucaaac   cuuc 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG7: 15778379-15778531 [+]

Mature ppe-miR6279

• Accession: MIMAT0027308
• Description: Prunus persica ppe-miR6279 mature miRNA
• Sequence: 123 - UAGACAAGAAUUCCAGAGACC - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371