Stem-loop ppe-MIR171b

Accession

MI0021646

Description

Prunus persica ppe-MIR171b precursor miRNA

Literature search

6 open access papers mention ppe-MIR171b
(17 sentences)

Sequence

450 reads, 31.0 reads per million, 16 experiments

caaaagagaaagCGAUGUUGGUGAGGUUCAAUCcgaagacagauuuacacaugcccgcugccguaaauugaucucagaUUGAGCCGCGCCAAUAUCACUUucucaacua
.....(((((((.((((((((((.(((((((((.((.((..(((((((.((.......))..)))))))..)))).))))))))).)))))))))).))))))).....

Structure

caaaa       C          A         c  a  ca       -a  ug 
     gagaaag GAUGUUGGUG GGUUCAAUC ga ga  gauuuac  ca  c
     ||||||| |||||||||| ||||||||| || ||  |||||||  ||  c
     cucuUUC CUAUAACCGC CCGAGUUag cu cu  uuaaaug  gu  c
aucaa       A          G         a  -  ag       cc  cg 

Annotation confidence High

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG7: 21049795-21049903 [+]

Mature ppe-miR171b-5p

• Accession: MIMAT0058479
• Description: Prunus persica ppe-miR171b-5p mature miRNA
• Sequence: 13 - CGAUGUUGGUGAGGUUCAAUC - 33
• Evidence: experimental ; unknown

Mature ppe-miR171b-3p

• Accession: MIMAT0027309
• Description: Prunus persica ppe-miR171b-3p mature miRNA
• Sequence: 79 - UUGAGCCGCGCCAAUAUCACUU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371