Stem-loop ppe-MIR6280

Accession

MI0021647

Description

Prunus persica ppe-MIR6280 precursor miRNA

Sequence

auuuuugguaUUGGCAGUAAGAUUUUUGGUGgaaaaaauacuuaacaacgagaucacugauuggucuucaacugaugcaguaauccuauugaacuacuuugcuauugcgguaacuauaauuguuguugcaguucccgaaggauuaccauuggcagugccgcugag
.....((((((((.((((..(((((((.(.(((......(((((((((((((((.((((((((((.....)))))).)))).))).........((((..((....)))))).......))))))))).))))))).)))))))...)))).)))))))).....

Structure

auuuu        G    -AA       G U   aaaaau   -         ----------------------------------   c    -      c 
     ugguaUUG CAGU   GAUUUUU G Gga      acu uaacaacga                                  gau acug auuggu u
     |||||||| ||||   ||||||| | |||      ||| |||||||||                                  ||| |||| |||||| u
     gccgugac guua   uuaggaa c ccu      uga guuguuguu                                  cua ugac uaguca c
gaguc        g    cca       g -   ------   c         aauaucaauggcguuaucguuucaucaaguuauc   a    g      a 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG7: 9285605-9285769 [-]

Mature ppe-miR6280

• Accession: MIMAT0027310
• Description: Prunus persica ppe-miR6280 mature miRNA
• Sequence: 11 - UUGGCAGUAAGAUUUUUGGUG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371