Stem-loop ppe-MIR6281

Accession

MI0021648

Description

Prunus persica ppe-MIR6281 precursor miRNA

Sequence

aaggaggucgaguGUUAGAGAUAGAGAGAGUGAGugagagacuaacagucgauauagagugauggcgguggugugaggcguagaacuaagagagugauggcgguggugcgagacugucagucucucauucacucucucugucucugaugcucaaucucuu
.(((((((.((((((((((((((((((((((((((((((((((.((((((..(((...((.((.((..((((............)))).....)).)).))....)))...)))))).)))))))))))))))))))))))))))))))))).)))))))

Structure

a       c                                  a      -ga   -aga  g  g  ---gg    gugag 
 aggaggu gaguGUUAGAGAUAGAGAGAGUGAGugagagacu acaguc   uau    gu au gc     uggu     g
 ||||||| |||||||||||||||||||||||||||||||||| ||||||   |||    || || ||     ||||      
 uucucua cucguagucucugucucucucacuuacucucuga ugucag   gug    cg ua ug     auca     c
-       a                                  c      agc   gugg  g  g  agaga    agaug 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG8: 277601-277760 [+]

Mature ppe-miR6281

• Accession: MIMAT0027311
• Description: Prunus persica ppe-miR6281 mature miRNA
• Sequence: 14 - GUUAGAGAUAGAGAGAGUGAG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371