Stem-loop ppe-MIR6284

Accession

MI0021651

Description

Prunus persica ppe-MIR6284 precursor miRNA

Sequence

guccuguugagaagcucuacauuuauagguccgucgcugguccaagguuugacaugccuggcuuugUUUGGACCAUGGAUGAAGAUUcugcagugag
.((((((..((((..(((.(((((((.((((((..((.((.(((.(((.......))))))))..)).))))))))))))).))))))))))).)).

Structure

g  -    ug    gc   a       a      uc  -u  u   a   uu 
 uc cugu  agaa  ucu cauuuau gguccg  gc  gg cca ggu  g
 || ||||  ||||  ||| ||||||| ||||||  ||  || ||| |||  a
 ag gacg  ucUU  AGA GUAGGUA CCAGGU  Ug  uc ggu ccg  c
g  u    --    --   A       -      -U  uu  -   -   ua 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG8: 21692327-21692423 [+]

Mature ppe-miR6284

• Accession: MIMAT0027314
• Description: Prunus persica ppe-miR6284 mature miRNA
• Sequence: 67 - UUUGGACCAUGGAUGAAGAUU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371