Stem-loop ppe-MIR482d

Accession

MI0021652

Description

Prunus persica ppe-MIR482d precursor miRNA

Literature search

2 open access papers mention ppe-MIR482d
(6 sentences)

Sequence

aggccucccagaggccaaugGAGAUGGGUGGCUGGGAAGGAuccucauaauuucucuacauuuuauuaauugaaaacuaaggaggugacaaaauaggggcucCCUCCCAUGCCACGCAUUUCUAuuguuucuggguuucucucc
.((...(((((((((.((((((((((.((((((((((.(((.((((...((((((.((..(((((.....)))))..)).)))))).........)))).))).))))).))))).)))))))))))))))))))...))....

Structure

---a  ccu         c          G     -     A   u    ------aua      c  ca     u 
    gg   cccagaggc aaugGAGAUG GUGGC UGGGA GGA ccuc         auuucu ua  uuuua u
    ||   ||||||||| |||||||||| ||||| ||||| ||| ||||         |||||| ||  ||||| a
    uc   gggucuuug uuAUCUUUAC CACCG ACCCU Ccu gggg         uggagg au  aaagu a
ccuc  uuu         -          G     U     C   c    auaaaacag      a  ca     u 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG8: 11352888-11353031 [-]

Mature ppe-miR482d-5p

• Accession: MIMAT0031174
• Description: Prunus persica ppe-miR482d-5p mature miRNA
• Sequence: 21 - GAGAUGGGUGGCUGGGAAGGA - 41
• Evidence: experimental ; Illumina [2]

Mature ppe-miR482d-3p

• Accession: MIMAT0027315
• Description: Prunus persica ppe-miR482d-3p mature miRNA
• Sequence: 103 - CCUCCCAUGCCACGCAUUUCUA - 124
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371


2. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149