Stem-loop ppe-MIR6285

Accession

MI0021653

Description

Prunus persica ppe-MIR6285 precursor miRNA

Sequence

5134 reads, 163.0 reads per million, 20 experiments

aagacaagucUAGUGAAGUUUGAAUUAGGGCUuagccaaucuaagguaaagCCCAAUUUUCAUUUCACUAGGcucaucuua
((((..(((((((((((((..(((((.((((((.(((.......))).)))))))))))..)))))))))))))..)))).

Structure

-    ca             UU     A      a   aa 
 aaga  agucUAGUGAAGU  GAAUU GGGCUu gcc  u
 ||||  |||||||||||||  ||||| |||||| |||  c
 uucu  ucGGAUCACUUUA  UUUAA CCCgaa ugg  u
a    ac             CU     -      a   aa 

Annotation confidence High

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG8: 17429089-17429169 [-]

Mature ppe-miR6285-5p

• Accession: MIMAT0027316
• Description: Prunus persica ppe-miR6285-5p mature miRNA
• Sequence: 11 - UAGUGAAGUUUGAAUUAGGGCU - 32
• Evidence: experimental ; Illumina [1]

Mature ppe-miR6285-3p

• Accession: MIMAT0058483
• Description: Prunus persica ppe-miR6285-3p mature miRNA
• Sequence: 52 - CCCAAUUUUCAUUUCACUAGG - 72
• Evidence: experimental ; unknown

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371