Stem-loop ppe-MIR6287

Accession

MI0021656

Description

Prunus persica ppe-MIR6287 precursor miRNA

Sequence

auugaugggaCAAGAAGUGGAAGUUUUGGGCggcuuaggagcaccaaaacucaaguccauuucuugagccuaaaugu
......((..(((((((((((((((((((((.........)).))))))))....)))))))))))..)).......

Structure

-auugau  ga           ----        -  ggc 
       gg  CAAGAAGUGGA    AGUUUUGG GC   u
       ||  |||||||||||    |||||||| ||   u
       cc  guucuuuaccu    ucaaaacc cg   a
uguaaau  ga           gaac        a  agg 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG1: 18210159-18210235 [-]

Mature ppe-miR6287

• Accession: MIMAT0027319
• Description: Prunus persica ppe-miR6287 mature miRNA
• Sequence: 11 - CAAGAAGUGGAAGUUUUGGGC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371