Stem-loop ppe-MIR6288a

Accession

MI0021657

Description

Prunus persica ppe-MIR6288a precursor miRNA

Sequence

aaaccaaaaacuagccacuugucauuuucuaauuaguucuuaguguguuaaaauuuuuuaagaaccgauuaGAAAAUGACAAGUGGCUAGUUuugaauuu
......((((((((((((((((((((((((((((.((((((((..............)))))))).))))))))))))))))))))))))))))......

Structure

aaacca                            a        uguguu 
      aaaacuagccacuugucauuuucuaauu guucuuag      a
      |||||||||||||||||||||||||||| ||||||||       
      uuUUGAUCGGUGAACAGUAAAAGauuag caagaauu      a
uuuaag                            c        uuuuaa 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG2: 22319732-22319831 [+]

Mature ppe-miR6288a

• Accession: MIMAT0027320
• Description: Prunus persica ppe-miR6288a mature miRNA
• Sequence: 72 - GAAAAUGACAAGUGGCUAGUU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371