Stem-loop ppe-MIR6289

Accession

MI0021659

Description

Prunus persica ppe-MIR6289 precursor miRNA

Sequence

acugacuuagugggucuaaccacucaaaggaagucauuuguuagaaagaagugaaguucuucauuugaauggcuUCCUUUGAAUGGUUAGGCUCAccacaucagc
.((((....(((((((((((((.(((((((((((((((((...(((.(((......))))))...))))))))))))))))).)))))))))))))....)))).

Structure

a    cuua             c                 uua   a   gu 
 cuga    gugggucuaacca ucaaaggaagucauuug   gaa gaa  g
 ||||    ||||||||||||| |||||||||||||||||   ||| |||   
 gacu    cACUCGGAUUGGU AGUUUCCUucgguaagu   cuu cuu  a
c    acac             A                 uua   -   ga 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG3: 4938144-4938248 [-]

Mature ppe-miR6289

• Accession: MIMAT0027322
• Description: Prunus persica ppe-miR6289 mature miRNA
• Sequence: 75 - UCCUUUGAAUGGUUAGGCUCA - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371