Stem-loop ppe-MIR6266b

Accession

MI0021661

Description

Prunus persica ppe-MIR6266b precursor miRNA

Sequence

cuuuuucuauUAAAUGCAGGGGCAAAAUGAUauuuuuauauuaaaauaaaaaaaaugaauaaaaaauuauaucuuuaaaauaacaauaaaagaaaaucaaauaaauaaauaaauaaauaaaaaaguuuuggggaguaaaaauugggauagagaguuuaauuuuaauuuuuuauucauauuuuuauaaauuuugacacaaaaauaccauuuugcccuugcauuuaacagaaaagu
.(((((((.((((((((((((((((((((.(((((((...(((((((.(((((.(((((((((((((((..((((((...(..((((.........(((((.........................))))).........))))..))))))).........))))))))))))))).)))))....)))))))...))))))).)))))))))))))))))))).))))))).

Structure

c       a                    A       aua       ---a     a               -------ua      aaa aa    aaaagaaaa     uaaauaaauaa 
 uuuuucu uUAAAUGCAGGGGCAAAAUG Uauuuuu   uuaaaau    aaaaa augaauaaaaaauua         ucuuua   u  caau         ucaaa           a
 ||||||| |||||||||||||||||||| |||||||   |||||||    ||||| |||||||||||||||         ||||||   |  ||||         |||||           u
 gaaaaga aauuuacguucccguuuuac auaaaaa   aguuuua    uuuuu uacuuauuuuuuaau         agagau   a  guua         gguuu           a
u       c                    c       cac       aaua     a               uuuaauuug      --- gg    aaaaugagg     ugaaaaaauaa 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 8232230-8232463 [+]

Mature ppe-miR6266b

• Accession: MIMAT0027324
• Description: Prunus persica ppe-miR6266b mature miRNA
• Sequence: 11 - UAAAUGCAGGGGCAAAAUGAU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371