Stem-loop ppe-MIR6290

Accession

MI0021662

Description

Prunus persica ppe-MIR6290 precursor miRNA

Sequence

auaaugagaguaagcagaagucuugagccguuccuguucuugcuggaauauuacugcugugauUGAAUGAGUUCAGAGAUCGUGUAcauaagaaag
.........(((.((.((..(((.(((((((((..(((((....)))))(((((....))))).))))).)))))))..)))).))).........

Structure

auaaugaga   a  a  ag   u    -     -------------cu     u 
         gua gc ga  ucu gagc cguuc               guucu g
         ||| || ||  ||| |||| |||||               |||||  
         cAU UG CU  AGA CUUG GUAAG               uaagg c
gaaagaaua   G  -  AG   -    A     Uuagugucgucauua     u 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 24414214-24414309 [+]

Mature ppe-miR6290

• Accession: MIMAT0027325
• Description: Prunus persica ppe-miR6290 mature miRNA
• Sequence: 64 - UGAAUGAGUUCAGAGAUCGUGUA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371