Stem-loop ppe-MIR6291a

Accession

MI0021663

Description

Prunus persica ppe-MIR6291a precursor miRNA

Sequence

402 reads, 77.0 reads per million, 19 experiments

aaaugcuagaCUUACCACAUUUUUAUACCAUauuguguaucaccucucuaauagaggugggcuccauccuuauuaaagaggugguagguaguacaCAAUGUGAUAUAAAAAUGUgguaagccuagcacua
...((((((.(((((((((((((((((.(((((((((((((((((((.((((((.(((((...))))).)))))).))))))).......)))))))))))).))))))))))))))))).))))))...

Structure

aaa      a                 C            -------       c      a     g 
   ugcuag CUUACCACAUUUUUAUA CAUauuguguau       caccucu uaauag ggugg  
   |||||| ||||||||||||||||| ||||||||||||       ||||||| |||||| ||||| c
   acgauc gaauggUGUAAAAAUAU GUGUAACacaug       guggaga auuauu cuacc  
auc      c                 A            auggaug       a      c     u 

Annotation confidence Low

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 8769016-8769145 [-]

Mature ppe-miR6291a-5p

• Accession: MIMAT0027326
• Description: Prunus persica ppe-miR6291a-5p mature miRNA
• Sequence: 11 - CUUACCACAUUUUUAUACCAU - 31
• Evidence: experimental ; Illumina [1]

Mature ppe-miR6291a-3p

• Accession: MIMAT0058487
• Description: Prunus persica ppe-miR6291a-3p mature miRNA
• Sequence: 96 - CAAUGUGAUAUAAAAAUGU - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371