Stem-loop ppe-MIR6292

Accession

MI0021664

Description

Prunus persica ppe-MIR6292 precursor miRNA

Sequence

ggugaaguccUAUCUUUUAAUCGUUAGAUCAugcuaaccaauuucauccaacgguuaagagauagagcaucaccu
(((((.((.((((((((((((((((.(((.((........))...))).)))))))))))))))).)).))))).

Structure

-     a  c                A   --C  gcu 
 gguga gu cUAUCUUUUAAUCGUU GAU   Au   a
 ||||| || |||||||||||||||| |||   ||    
 ccacu cg gauagagaauuggcaa cua   ua   a
u     a  a                c   cuu  acc 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 11592569-11592643 [-]

Mature ppe-miR6292

• Accession: MIMAT0027327
• Description: Prunus persica ppe-miR6292 mature miRNA
• Sequence: 11 - UAUCUUUUAAUCGUUAGAUCA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371