Stem-loop ppe-MIR6292

Accession

MI0021664

Description

Prunus persica ppe-MIR6292 precursor miRNA

Sequence

4139 reads, 191.0 reads per million, 20 experiments

ggugaaguccUAUCUUUUAAUCGUUAGAUCAugcuaaccaauuucAUCCAACGGUUAAGAGAUAgagcaucaccu
(((((.((.((((((((((((((((.(((.((........))...))).)))))))))))))))).)).))))).

Structure

-     a  c                A   --C  gcu 
 gguga gu cUAUCUUUUAAUCGUU GAU   Au   a
 ||||| || |||||||||||||||| |||   ||    
 ccacu cg gAUAGAGAAUUGGCAA CUA   ua   a
u     a  a                C   cuu  acc 

Annotation confidence Medium

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG4: 11592569-11592643 [-]

Mature ppe-miR6292-5p

• Accession: MIMAT0027327
• Description: Prunus persica ppe-miR6292-5p mature miRNA
• Sequence: 11 - UAUCUUUUAAUCGUUAGAUCA - 31
• Evidence: experimental ; Illumina [1]

Mature ppe-miR6292-3p

• Accession: MIMAT0058488
• Description: Prunus persica ppe-miR6292-3p mature miRNA
• Sequence: 46 - AUCCAACGGUUAAGAGAUA - 64
• Evidence: experimental ; unknown

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371