miRBase entry: ppe-MIR398b

Stem-loop ppe-MIR398b


Accession
MI0021665
Description
Prunus persica ppe-MIR398b precursor miRNA

Literature search
5 open access papers mention ppe-MIR398b
(11 sentences)

Sequence

uggagccccacaggggugaccugagaucacauguauguggcaacagcagaacccaagagggccaucguucgguccugcuguucuuugcauuccaCGUGUUCUCAGGUCGCCCCUGcagggcuuuc
.(((((((..((((((((((((((((.(((.((.((((((.((((((((.(((...((......))....))).))))))))))..))))..)).))).))))))))))))))))..))))))).

Structure
u       ca                u   a  -u    --  c        a   -caa  gg 
 ggagccc  caggggugaccugaga cac ug  augu  gg aacagcag acc    ga  g
 |||||||  |||||||||||||||| ||| ||  ||||  || |||||||| |||    ||   
 uuucggg  GUCCCCGCUGGACUCU GUG ac  uacg  uc uugucguc ugg    cu  c
c       ac                U   C  cu    uu  -        c   cuug  ac 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG4: 19261810-19261934 [-]

Database links

Mature ppe-miR398b

Accession MIMAT0027328
Description Prunus persica ppe-miR398b mature miRNA
Sequence 95 - CGUGUUCUCAGGUCGCCCCUG - 115
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371