Stem-loop ppe-MIR6293

Accession

MI0021666

Description

Prunus persica ppe-MIR6293 precursor miRNA

Sequence

35707 reads, 1157.0 reads per million, 20 experiments

ggacuauucaUAAGAGGCUGAUGACUAAAACuuaucccucauaaucccaccaauuucaaggggauuaaggggauaaaUUUUAGUCAUCAACCUCUUAUAGAUaguccc
((((((((.((((((((.((((((((((((.((((((((..(((((((............))))))).)))))))).)))))))))))).)))))))).)))))))).

Structure

-        c        C            C        ca       accaa 
 ggacuauu aUAAGAGG UGAUGACUAAAA uuaucccu  uaauccc     u
 |||||||| |||||||| |||||||||||| ||||||||  |||||||      
 ccugaUAG UAUUCUCC ACUACUGAUUUU aauagggg  auuaggg     u
c        A        A            a        -a       gaacu 

Annotation confidence Medium

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG5: 2922247-2922354 [+]

Mature ppe-miR6293-5p

• Accession: MIMAT0027329
• Description: Prunus persica ppe-miR6293-5p mature miRNA
• Sequence: 11 - UAAGAGGCUGAUGACUAAAAC - 31
• Evidence: experimental ; Illumina [1]

Mature ppe-miR6293-3p

• Accession: MIMAT0058490
• Description: Prunus persica ppe-miR6293-3p mature miRNA
• Sequence: 78 - UUUUAGUCAUCAACCUCUUAUAGAU - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371