Stem-loop ppe-MIR6295

Accession

MI0021668

Description

Prunus persica ppe-MIR6295 precursor miRNA

Sequence

ucaaaaaugcugaaucaucaucuguccucaagcucuguuauucaauaaguaacuuguccucccccacagcuuacacauucuuuuucuuuuuacuguuggucauuuuuaucucauuuaucuuuaguucacauuugacgaggugagauuucuaaauugcaaaagugucaacucaugagauuuuuaccaagggaacgcaaguugagguuagcagugaugaagaggguuuaaugguacuuuguuugcugcaacuauaguggaaacugugggggaggacaaguuccuuauugaauaccagagcuuGAGGACAGAAGAUGAUUCAGCauuucugag
(((.(((((((((((((((.(((((((((((((((((.(((((((((((.(((((((((((((((((((.(..(((................((.(((((.......(((((((........(((((((.((((.(((....((....))...))))))).)))..)))).)))))))....))))).))(((....)))..((((.(((((...(((.(((((........))))).))))))))))))...)))..).))))))))))))))))))).))))))))))).))))))))))))))))).))))))))))))))).))).

Structure

-   a               a                 u           u                   c ua   -----------------------------------------------auucuuuuucuuuuua  g     cauuuuu       uuaucuuu    --   a    a   ggug  a 
 uca aaaugcugaaucauc ucuguccucaagcucug uauucaauaag aacuuguccucccccacag u  cac                                                               cu uuggu       aucucau        aguu  cac uuug cga    ag u
 ||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |  |||                                                               || |||||       |||||||        ||||  ||| |||| |||    ||  
 agu uuuaCGACUUAGUAG AGACAGGAGuucgagac auaaguuauuc uugaacaggaggggguguc a  gug                                                               gg aacca       uagagua        ucaa  gug aaac guu    uc u
g   c               A                 c           c                   a ag   auaucaacgucguuuguuucaugguaauuugggagaaguagugacgauuggaguugaacgcaa  g     ---uuuu       -------c    cu   a    -   -aaa  u 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG6: 27549124-27549453 [+]

Mature ppe-miR6295

• Accession: MIMAT0027331
• Description: Prunus persica ppe-miR6295 mature miRNA
• Sequence: 301 - GAGGACAGAAGAUGAUUCAGC - 321
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371