Stem-loop ppe-MIR6296

Accession

MI0021669

Description

Prunus persica ppe-MIR6296 precursor miRNA

Sequence

cgguuaagaaauaaggucucaccuaagggccauauauaaaacccucacuauugaauucuugcauacauuuguacauagaauauauagugagugccuuaucUAAGGCCCUUAGAUGAGACCCcaucuuaacc
.((((((((.....(((((((.(((((((((.((.((((..(.((((((((...(((((((((......))))...)))))..)))))))).)..)))).)).))))))))).)))))))...))))))))

Structure

c        aauaa       c         a  u    aa c        uga     ---    ua 
 gguuaaga     ggucuca cuaagggcc ua auaa  c cucacuau   auucu   ugca  c
 ||||||||     ||||||| ||||||||| || ||||  | ||||||||   |||||   ||||   
 ccaauucu     CCAGAGU GAUUCCCGG AU uauu  g gagugaua   uaaga   augu  a
-        --acC       A         A  c    cc u        -ua     uac    uu 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG6: 30127057-30127187 [+]

Mature ppe-miR6296

• Accession: MIMAT0027332
• Description: Prunus persica ppe-miR6296 mature miRNA
• Sequence: 101 - UAAGGCCCUUAGAUGAGACCC - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371