Stem-loop ppe-MIR6266c

Accession

MI0021671

Description

Prunus persica ppe-MIR6266c precursor miRNA

Sequence

306 reads, 32.0 reads per million, 19 experiments

cuuuuucuauuaaaugcAGGGGCAAAAUGAUAUUUuuauauuaaaacuaaaaaaaugaauaaaaaaaucauaccuuuaaaauaacaauaaaagaaaaucaaauuaaaaaaacaauaauaaaguuuuuggggaguagaaaucgagauagaagggggagagagaguuuaauuuuaauuuuuuaguuuuuuaauuuuuaauuuuuuaauucauauuuuaaucaauuuaauauaaaaauaccauUUUGCCCUUGCAUUUAACAaaauuga
.........((((((((((((((((((((.(((((((((((((((....((((.((((((.(((((((..(((((((((((..........................................)))))))).)))......(((((.((((((....((((((((.......))))))))..)))))).)))))..))))))).)))))).))))......))))))))))))))).)))))))))))))))))))).........

Structure

cuuuuucua                    A               --acua    a      a       cauaccuuuaaaauaacaauaaaagaaaaucaaauuaaaaaaacaauaauaaaguuuuuggggaguagaaauc     a      ggag        ua 
         uuaaaugcAGGGGCAAAAUG UAUUUuuauauuaaa      aaaa augaau aaaaaau                                                                         gagau gaaggg    agagaguu  a
         |||||||||||||||||||| |||||||||||||||      |||| |||||| |||||||                                                                         ||||| ||||||    ||||||||  u
         AAUUUACGUUCCCGUUUuac auaaaaauauaauuu      uuuu uacuua uuuuuua                                                                         uuuua uuuuuu    uuuuuuaa  u
aguuaaaAC                    c               aacuaa    a      a       -----------------------------------------------------------------------au     a      --ga        uu 

Annotation confidence Not enough data

Comments

Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context

chrG7: 12263799-12264064 [-]

Mature ppe-miR6266c-5p

• Accession: MIMAT0027334
• Description: Prunus persica ppe-miR6266c-5p mature miRNA
• Sequence: 18 - AGGGGCAAAAUGAUAUUU - 35
• Evidence: experimental ; Illumina [1]

Mature ppe-miR6266c-3p

• Accession: MIMAT0058494
• Description: Prunus persica ppe-miR6266c-3p mature miRNA
• Sequence: 241 - UUUGCCCUUGCAUUUAACA - 259
• Evidence: experimental ; unknown

References

1. PubMed ID: 22863067
   High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
   Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
   BMC Genomics (2012) 13:371